Swol_1936 protein (Syntrophomonas wolfei Goettingen)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Swol_1936

Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA. (260 aa)

Predicted Functional Partners:

Swol_1935

0.993

Swol_0435

0.983

Swol_2030

0.983

Swol_0307

0.973

Swol_0791

0.973

Swol_1171

0.973

Swol_1485

0.973

Swol_1242

0.934

Swol_1355

0.934

Swol_1356

0.934

Your Current Organism:

Syntrophomonas wolfei Goettingen

NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Swol_0307	Swol_1936	KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.973
Swol_0435	Swol_1936	KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.983
Swol_0791	Swol_1936	KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.973
Swol_1171	Swol_1936	KEGG: tte:TTE0548 3-Hydroxyacyl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.973
Swol_1242	Swol_1355	KEGG: tte:TTE0551 predicted acyl dehydratase.	KEGG: tte:TTE0551 predicted acyl dehydratase.	0.908
Swol_1242	Swol_1356	KEGG: tte:TTE0551 predicted acyl dehydratase.	KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain.	0.908
Swol_1242	Swol_1936	KEGG: tte:TTE0551 predicted acyl dehydratase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.934
Swol_1355	Swol_1242	KEGG: tte:TTE0551 predicted acyl dehydratase.	KEGG: tte:TTE0551 predicted acyl dehydratase.	0.908
Swol_1355	Swol_1356	KEGG: tte:TTE0551 predicted acyl dehydratase.	KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain.	0.954
Swol_1355	Swol_1936	KEGG: tte:TTE0551 predicted acyl dehydratase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.934
Swol_1356	Swol_1242	KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain.	KEGG: tte:TTE0551 predicted acyl dehydratase.	0.908
Swol_1356	Swol_1355	KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain.	KEGG: tte:TTE0551 predicted acyl dehydratase.	0.954
Swol_1356	Swol_1936	KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.934
Swol_1485	Swol_1936	KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.973
Swol_1935	Swol_1936	3-hydroxyacyl-CoA dehydrogenase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the oxidation of 3-hydroxybutyryl-CoA to acetoacetyl-CoA. Belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	0.993
Swol_1936	Swol_0307	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase.	0.973
Swol_1936	Swol_0435	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase.	0.983
Swol_1936	Swol_0791	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase.	0.973
Swol_1936	Swol_1171	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	KEGG: tte:TTE0548 3-Hydroxyacyl-CoA dehydrogenase.	0.973
Swol_1936	Swol_1242	Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA.	KEGG: tte:TTE0551 predicted acyl dehydratase.	0.934

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About