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rimK rimK Maqu_2354 Maqu_2354 Maqu_2352 Maqu_2352 Maqu_2355 Maqu_2355 Maqu_3694 Maqu_3694 Maqu_2042 Maqu_2042 Maqu_3803 Maqu_3803 Maqu_2351 Maqu_2351 Maqu_2356 Maqu_2356 Maqu_2357 Maqu_2357 Maqu_0076 Maqu_0076
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
rimKSSU ribosomal protein S6P modification protein; TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vfi:VF0658 ribosomal protein S6 modification protein. (301 aa)    
Predicted Functional Partners:
Maqu_2354
PFAM: protein of unknown function DUF785; KEGG: hch:HCH_01738 hypothetical protein.
     0.995
Maqu_2352
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: csa:Csal_1199 succinylglutamate desuccinylase/aspartoacylase.
     0.957
Maqu_2355
PFAM: MscS Mechanosensitive ion channel; KEGG: aeh:Mlg_2381 MscS mechanosensitive ion channel.
 
    0.834
Maqu_3694
PFAM: protein of unknown function DUF785; KEGG: noc:Noc_1082 protein of unknown function DUF785.
 
     0.777
Maqu_2042
PFAM: protein of unknown function DUF785; KEGG: vch:VC1162 hypothetical protein.
 
     0.771
Maqu_3803
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_0100 deacylase-like.
     0.767
Maqu_2351
PFAM: protein of unknown function UPF0047; KEGG: abo:ABO_2390 hypothetical protein.
       0.727
Maqu_2356
KEGG: sru:SRU_0809 hypothetical protein.
       0.726
Maqu_2357
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: hch:HCH_01735 deoxyribodipyrimidine photolyase.
     
 0.497
Maqu_0076
SSU ribosomal protein S6P modification protein; PFAM: RimK domain protein ATP-grasp; KEGG: bha:BH2598 hypothetical protein.
 
   
0.415
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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