STRINGSTRING
EAT98522.1 EAT98522.1 hom hom EAT98505.1 EAT98505.1 EAT98544.1 EAT98544.1 EAT98521.1 EAT98521.1 EAT98580.1 EAT98580.1 trx trx trxB trxB EAT98576.1 EAT98576.1 rsmI rsmI rpmE rpmE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT98522.1Putative protein (UPF0102 domain); Pfam match to PF02021.12 UPF0102; Belongs to the UPF0102 family. (113 aa)    
Predicted Functional Partners:
hom
Pfam matches to PF00742.14 Homoserine_dh, and to PF03447.11 NAD_binding_3, and to PF01842.20 ACT.
       0.800
EAT98505.1
Aspartate aminotransferase; Pfam match to PF00155.16 Aminotran_1_2.
       0.800
EAT98544.1
Hypothetical protein.
       0.800
EAT98521.1
Hypothetical protein.
       0.800
EAT98580.1
rRNA methyltransferase, TrmH family, group 3; Pfam matches to PF00588.14 SpoU_methylase, and to PF08032.7 SpoU_sub_bind; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.800
trx
Thioredoxin; Pfam matches to PF00085.15 Thioredoxin, and to PF13098.1 Thioredoxin_2, and to PF13905.1 Thioredoxin_8, and to PF07449.6 HyaE; Belongs to the thioredoxin family.
  
    0.624
trxB
Thioredoxin reductase; Pfam matches to PF07992.9 Pyr_redox_2, and to PF00070.22 Pyr_redox, and to PF13738.1 Pyr_redox_3, and to PF00890.19 FAD_binding_2, and to PF13450.1 NAD_binding_8, and to PF01266.19 DAO.
       0.621
EAT98576.1
Hypothetical protein.
       0.613
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.584
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.584
Your Current Organism:
Campylobacter concisus
NCBI taxonomy Id: 360104
Other names: C. concisus 13826, Campylobacter concisus 13826, Campylobacter concisus str. 13826, Campylobacter concisus strain 13826
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