STRINGSTRING
ligA ligA ABS51235.1 ABS51235.1 ribF ribF rrmJ rrmJ cmoA cmoA ABS51009.1 ABS51009.1 polA polA argB argB kdsB kdsB ABS51270.1 ABS51270.1 thrC thrC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (645 aa)    
Predicted Functional Partners:
ABS51235.1
DNA ligase (Polydeoxyribonucleotide synthase [ATP]); Identified by match to protein family HMM PF01068.
     
 0.922
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
  
    0.806
rrmJ
Ribosomal RNA large subunit methyltransferase J; Identified by match to protein family HMM PF01479; match to protein family HMM PF01728.
  
    0.796
cmoA
Putative methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
       0.791
ABS51009.1
Putative outer membrane lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.791
polA
DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.781
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
     
 0.780
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466; Belongs to the KdsB family.
       0.774
ABS51270.1
Conserved hypothetical protein.
       0.773
thrC
Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.
       0.773
Your Current Organism:
Campylobacter hominis
NCBI taxonomy Id: 360107
Other names: C. hominis ATCC BAA-381, Campylobacter hominis ATCC BAA-381, Campylobacter hominis str. ATCC BAA-381, Campylobacter hominis strain ATCC BAA-381
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