Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACQ69064.1 | hfq | EAT1b_0130 | EAT1b_0132 | Hypothetical protein. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.551 |
| ACQ69064.1 | miaA | EAT1b_0130 | EAT1b_0131 | Hypothetical protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.620 |
| ACQ69796.1 | clpP | EAT1b_0867 | EAT1b_0868 | PFAM: sigma-54 DNA-binding domain protein; KEGG: dno:DNO_0532 RNA polymerase sigma-54 factor. | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.599 |
| ACQ69796.1 | hfq | EAT1b_0867 | EAT1b_0132 | PFAM: sigma-54 DNA-binding domain protein; KEGG: dno:DNO_0532 RNA polymerase sigma-54 factor. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.569 |
| ACQ70754.1 | ACQ71445.1 | EAT1b_1828 | EAT1b_2525 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | PFAM: Catalase domain protein; KEGG: bcy:Bcer98_0874 catalase; Belongs to the catalase family. | 0.939 |
| ACQ70754.1 | clpP | EAT1b_1828 | EAT1b_0868 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.435 |
| ACQ70754.1 | hfq | EAT1b_1828 | EAT1b_0132 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.679 |
| ACQ71445.1 | ACQ70754.1 | EAT1b_2525 | EAT1b_1828 | PFAM: Catalase domain protein; KEGG: bcy:Bcer98_0874 catalase; Belongs to the catalase family. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.939 |
| ACQ71445.1 | hfq | EAT1b_2525 | EAT1b_0132 | PFAM: Catalase domain protein; KEGG: bcy:Bcer98_0874 catalase; Belongs to the catalase family. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.673 |
| ACQ71927.1 | hfq | EAT1b_3013 | EAT1b_0132 | PFAM: Polynucleotide adenylyltransferase region; KEGG: bcy:Bcer98_1260 tRNA CCA-pyrophosphorylase. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.524 |
| ACQ71927.1 | miaA | EAT1b_3013 | EAT1b_0131 | PFAM: Polynucleotide adenylyltransferase region; KEGG: bcy:Bcer98_1260 tRNA CCA-pyrophosphorylase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.475 |
| ACQ71927.1 | pnp | EAT1b_3013 | EAT1b_2961 | PFAM: Polynucleotide adenylyltransferase region; KEGG: bcy:Bcer98_1260 tRNA CCA-pyrophosphorylase. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.597 |
| clpP | ACQ69796.1 | EAT1b_0868 | EAT1b_0867 | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | PFAM: sigma-54 DNA-binding domain protein; KEGG: dno:DNO_0532 RNA polymerase sigma-54 factor. | 0.599 |
| clpP | ACQ70754.1 | EAT1b_0868 | EAT1b_1828 | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.435 |
| clpP | clpX | EAT1b_0868 | EAT1b_2638 | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.989 |
| clpP | hfq | EAT1b_0868 | EAT1b_0132 | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.500 |
| clpP | pnp | EAT1b_0868 | EAT1b_2961 | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.405 |
| clpX | clpP | EAT1b_2638 | EAT1b_0868 | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.989 |
| clpX | hfq | EAT1b_2638 | EAT1b_0132 | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.732 |
| csrA | hfq | EAT1b_0928 | EAT1b_0132 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.701 |
page 1 of 2