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rlmH rlmH rsfS rsfS thiE thiE accD accD Abu_0450 Abu_0450 prmA prmA Abu_0449 Abu_0449 nadD nadD metK metK rsmI rsmI ribD ribD
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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rlmHConserved hypothetical protein (DUF163 domain protein); Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (159 aa)    
Predicted Functional Partners:
rsfS
Conserved hypothetical protein (DUF143 domain protein); Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.969
thiE
Thiamine-phosphate pyrophosphorylase; Pfam match to PF02581 TMP-TENI, score 60.4, E-value 4.3E-020.
  
    0.803
accD
acetyl-CoA carboxylase, carboxyltransferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.802
Abu_0450
Probable tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.703
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
 
   
 0.661
Abu_0449
Conserved hypothetical protein.
       0.643
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.601
metK
S-adenosylmethionine synthetase; Pfam matches to PF02773 S-AdoMet_synt_C, score 179.1, E-value 1E-050, and to PF02772 S-AdoMet_synt_M, score 97.5, E-value 3.5E-026, and to PF00438 S-AdoMet_synt_N, score 90.3, E-value 8.2E-026; Belongs to the AdoMet synthase family.
       0.549
rsmI
Conserved hypothetical protein, putative methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
   
 0.507
ribD
Bifunctional riboflavin biosynthesis protein RibD; Pfam match to PF00383 dCMP_cyt_deam_1, score 117.5, E-value 3.5E-032.
     
 0.501
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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