node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
infA | rplQ | BCc_195 | BCc_315 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 0.962 |
infA | rpmD | BCc_195 | BCc_323 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 50S ribosomal subunit protein L30; COG_category J;COG_number COG1841; RpmD. | 0.998 |
infA | rpmJ | BCc_195 | BCc_320 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 50S ribosomal protein L36; COG_category J;COG_number COG0257; RpmJ; Belongs to the bacterial ribosomal protein bL36 family. | 0.970 |
infA | rpoA | BCc_195 | BCc_316 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | RNA polymerase, a subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.970 |
infA | rpsA | BCc_195 | BCc_190 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.437 |
infA | rpsB | BCc_195 | BCc_142 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S2; COG_category J;COG_number COG0052; RpsB; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
infA | rpsD | BCc_195 | BCc_317 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
infA | rpsK | BCc_195 | BCc_318 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
infA | rpsM | BCc_195 | BCc_319 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
infA | rpsO | BCc_195 | BCc_228 | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
rplQ | infA | BCc_315 | BCc_195 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | Initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.962 |
rplQ | rpmD | BCc_315 | BCc_323 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 50S ribosomal subunit protein L30; COG_category J;COG_number COG1841; RpmD. | 0.998 |
rplQ | rpmJ | BCc_315 | BCc_320 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 50S ribosomal protein L36; COG_category J;COG_number COG0257; RpmJ; Belongs to the bacterial ribosomal protein bL36 family. | 0.998 |
rplQ | rpoA | BCc_315 | BCc_316 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | RNA polymerase, a subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
rplQ | rpsA | BCc_315 | BCc_190 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.994 |
rplQ | rpsB | BCc_315 | BCc_142 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 30S ribosomal protein S2; COG_category J;COG_number COG0052; RpsB; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
rplQ | rpsD | BCc_315 | BCc_317 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplQ | rpsK | BCc_315 | BCc_318 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplQ | rpsM | BCc_315 | BCc_319 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplQ | rpsO | BCc_315 | BCc_228 | 50S ribosomal protein L17; COG_category J;COG_number COG0203; RplQ; Belongs to the bacterial ribosomal protein bL17 family. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |