Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplU | Fnod_0434 | Fnod_0438 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
| rplM | rpmA | Fnod_0434 | Fnod_0436 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L27; KEGG: tpt:Tpet_1338 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
| rplM | rpmB | Fnod_0434 | Fnod_1024 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L28; KEGG: tpt:Tpet_0669 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.988 |
| rplM | rpmE | Fnod_0434 | Fnod_0169 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L31; Binds the 23S rRNA. | 0.972 |
| rplM | rpmF | Fnod_0434 | Fnod_0836 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: tpt:Tpet_0775 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.987 |
| rplM | rpmH | Fnod_0434 | Fnod_1041 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L34; KEGG: tpt:Tpet_1330 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.960 |
| rplM | rpsI | Fnod_0434 | Fnod_0433 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein S9; KEGG: tma:TM1453 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
| rplM | rpsO | Fnod_0434 | Fnod_1718 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.992 |
| rplM | rpsP | Fnod_0434 | Fnod_0646 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein S16; KEGG: tpt:Tpet_1226 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
| rplM | rpsT | Fnod_0434 | Fnod_0126 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.988 |
| rplU | rplM | Fnod_0438 | Fnod_0434 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.994 |
| rplU | rpmA | Fnod_0438 | Fnod_0436 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein L27; KEGG: tpt:Tpet_1338 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
| rplU | rpmB | Fnod_0438 | Fnod_1024 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein L28; KEGG: tpt:Tpet_0669 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.989 |
| rplU | rpmE | Fnod_0438 | Fnod_0169 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein L31; Binds the 23S rRNA. | 0.980 |
| rplU | rpmF | Fnod_0438 | Fnod_0836 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: tpt:Tpet_0775 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.989 |
| rplU | rpmH | Fnod_0438 | Fnod_1041 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein L34; KEGG: tpt:Tpet_1330 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.979 |
| rplU | rpsI | Fnod_0438 | Fnod_0433 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein S9; KEGG: tma:TM1453 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.993 |
| rplU | rpsO | Fnod_0438 | Fnod_1718 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.968 |
| rplU | rpsP | Fnod_0438 | Fnod_0646 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein S16; KEGG: tpt:Tpet_1226 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.989 |
| rplU | rpsT | Fnod_0438 | Fnod_0126 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.988 |
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