node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Fnod_0176 | mutL | Fnod_0176 | Fnod_1711 | PFAM: DNA repair protein RadC; KEGG: tma:TM1557 DNA repair protein; Belongs to the UPF0758 family. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.577 |
Fnod_0176 | mutS | Fnod_0176 | Fnod_1250 | PFAM: DNA repair protein RadC; KEGG: tma:TM1557 DNA repair protein; Belongs to the UPF0758 family. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.624 |
Fnod_0176 | topA | Fnod_0176 | Fnod_1027 | PFAM: DNA repair protein RadC; KEGG: tma:TM1557 DNA repair protein; Belongs to the UPF0758 family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.457 |
Fnod_0204 | Fnod_0495 | Fnod_0204 | Fnod_0495 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | 0.664 |
Fnod_0204 | Fnod_0841 | Fnod_0204 | Fnod_0841 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | KEGG: tma:TM1395 hypothetical protein. | 0.791 |
Fnod_0204 | Fnod_1203 | Fnod_0204 | Fnod_1203 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.791 |
Fnod_0204 | mutL | Fnod_0204 | Fnod_1711 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.986 |
Fnod_0204 | mutS | Fnod_0204 | Fnod_1250 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.928 |
Fnod_0204 | mutS2 | Fnod_0204 | Fnod_0299 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.939 |
Fnod_0204 | polA | Fnod_0204 | Fnod_0360 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.912 |
Fnod_0204 | topA | Fnod_0204 | Fnod_1027 | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.663 |
Fnod_0495 | Fnod_0204 | Fnod_0495 | Fnod_0204 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | 0.664 |
Fnod_0495 | Fnod_0841 | Fnod_0495 | Fnod_0841 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | KEGG: tma:TM1395 hypothetical protein. | 0.715 |
Fnod_0495 | Fnod_1203 | Fnod_0495 | Fnod_1203 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.780 |
Fnod_0495 | mutL | Fnod_0495 | Fnod_1711 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.856 |
Fnod_0495 | mutS | Fnod_0495 | Fnod_1250 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.664 |
Fnod_0495 | polA | Fnod_0495 | Fnod_0360 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
Fnod_0495 | topA | Fnod_0495 | Fnod_1027 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.996 |
Fnod_0841 | Fnod_0204 | Fnod_0841 | Fnod_0204 | KEGG: tma:TM1395 hypothetical protein. | PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein. | 0.791 |
Fnod_0841 | Fnod_0495 | Fnod_0841 | Fnod_0495 | KEGG: tma:TM1395 hypothetical protein. | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase. | 0.715 |