STRINGSTRING
LVIS_1488 LVIS_1488 LVIS_1487 LVIS_1487 LVIS_1486 LVIS_1486 LVIS_1485 LVIS_1485 LVIS_1489 LVIS_1489 LVIS_0668 LVIS_0668 LVIS_1358 LVIS_1358 LVIS_1632 LVIS_1632 LVIS_1191 LVIS_1191 LVIS_0483 LVIS_0483 LVIS_1220 LVIS_1220
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1488Hypothetical protein; Belongs to the UPF0342 family. (114 aa)    
Predicted Functional Partners:
LVIS_1487
DNA repair exonuclease.
 
     0.751
LVIS_1486
DNA repair ATPase.
 
     0.734
LVIS_1485
Predicted HD-superfamily hydrolase.
 
    0.720
LVIS_1489
Membrane carboxypeptidase (penicillin-binding protein).
       0.668
LVIS_0668
Esterase/lipase.
  
    0.663
LVIS_1358
Hypothetical protein.
  
    0.643
LVIS_1632
Hypothetical protein.
  
     0.638
LVIS_1191
Adenine-specific DNA methylase.
  
     0.616
LVIS_0483
Lipoate-protein ligase A.
  
    0.595
LVIS_1220
Hypothetical protein; Belongs to the UPF0473 family.
 
     0.482
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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