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Smal_0358 Smal_0358 birA birA Smal_0357 Smal_0357 Smal_0359 Smal_0359 ribB ribB Smal_1697 Smal_1697 Smal_0256 Smal_0256 Smal_1171 Smal_1171 Smal_1172 Smal_1172 Smal_1356 Smal_1356 Smal_3881 Smal_3881
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_0358PFAM: nitroreductase; KEGG: xcb:XC_0568 hypothetical protein. (196 aa)    
Predicted Functional Partners:
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.716
Smal_0357
PFAM: protein of unknown function DUF1022; KEGG: xcv:XCV0586 hypothetical protein.
 
     0.671
Smal_0359
PFAM: YceI family protein; KEGG: xac:XAC0555 hypothetical protein; Belongs to the UPF0312 family.
       0.636
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.513
Smal_1697
KEGG: bur:Bcep18194_B1532 flavin-dependent oxidoreductase.
 
  
 0.468
Smal_0256
PFAM: ABC-2 type transporter; KEGG: ilo:IL0311 ABC-type multidrug transport system, permease component.
  
    0.446
Smal_1171
KEGG: aci:ACIAD2651 hypothetical protein.
  
    0.446
Smal_1172
KEGG: dac:Daci_4570 ABC-2 type transporter.
  
    0.446
Smal_1356
PFAM: ABC-2 type transporter; KEGG: aha:AHA_0486 ABC-type multidrug transport system, permease component.
  
    0.446
Smal_3881
PFAM: ABC-2 type transporter; KEGG: xcb:XC_4068 permease.
  
    0.446
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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