STRINGSTRING
panD panD panC panC panB panB Smal_1329 Smal_1329 Smal_1183 Smal_1183 Smal_1728 Smal_1728 Smal_0713 Smal_0713 pgi pgi Smal_1024 Smal_1024 purA purA Smal_0474 Smal_0474
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (126 aa)    
Predicted Functional Partners:
panC
Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 
 0.999
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.990
Smal_1329
PFAM: aminotransferase class-III; KEGG: xcb:XC_1759 beta alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.920
Smal_1183
PFAM: aminotransferase class-III; KEGG: dac:Daci_0137 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.916
Smal_1728
PFAM: Aldehyde Dehydrogenase_; KEGG: xcb:XC_2445 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.902
Smal_0713
Asparaginase; KEGG: xcv:XCV0963 asparaginase.
     
 0.866
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: xoo:XOO2360 glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.864
Smal_1024
PFAM: GCN5-related N-acetyltransferase; KEGG: shl:Shal_0014 GCN5-related N-acetyltransferase.
   
 
 0.834
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.813
Smal_0474
PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: xcb:XC_2806 asparagine synthase.
     
  0.800
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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