STRINGSTRING
hflD hflD mnmA mnmA nudJ nudJ Smal_1921 Smal_1921 rnt rnt zipA zipA Smal_3906 Smal_3906 truD truD Smal_0867 Smal_0867 Smal_2948 Smal_2948 Smal_0541 Smal_0541
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflDPFAM: protein of unknown function DUF489; KEGG: xac:XAC1997 hypothetical protein. (204 aa)    
Predicted Functional Partners:
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.968
nudJ
PFAM: NUDIX hydrolase; KEGG: xcv:XCV2047 NUDIX hydrolase family protein; Belongs to the Nudix hydrolase family. NudJ subfamily.
       0.864
Smal_1921
Conserved hypothetical protein; KEGG: tel:tlr0323 unknown protein.
       0.812
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
    0.716
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.682
Smal_3906
PFAM: protein of unknown function DUF709; KEGG: xcv:XCV4171 hypothetical protein.
  
    0.678
truD
tRNA pseudouridine synthase D TruD; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
    0.675
Smal_0867
PFAM: protein of unknown function DUF177; KEGG: xcb:XC_3231 hypothetical protein.
  
    0.654
Smal_2948
KEGG: xom:XOO_3584 hypothetical protein.
  
     0.626
Smal_0541
Protein disulfide isomerase precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
     0.621
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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