STRINGSTRING
alr alr ACD19479.1 ACD19479.1 ACD21442.1 ACD21442.1 murF murF ddl ddl ACD14924.1 ACD14924.1 ACD15213.1 ACD15213.1 ACD16213.1 ACD16213.1 ACD15214.1 ACD15214.1 ACD21248.1 ACD21248.1 ACD17109.1 ACD17109.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (356 aa)    
Predicted Functional Partners:
ACD19479.1
TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rfr:Rfer_4054 alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.955
ACD21442.1
KEGG: rru:Rru_A3686 alanine dehydrogenase and pyridine nucleotide transhydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family.
  
 
 0.955
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.953
ddl
D-alanine/D-alanine ligase; Cell wall formation.
 
 
 0.946
ACD14924.1
PFAM: aminotransferase class IV; KEGG: bxe:Bxe_A4217 putative aminotransferase, class IV.
    
 0.932
ACD15213.1
PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A3891 aspartate aminotransferase.
    
 0.822
ACD16213.1
PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A2382 aminotransferase AlaT.
    
 0.822
ACD15214.1
PFAM: aminotransferase class V; KEGG: bch:Bcen2424_0828 aminotransferase, class V.
    
 0.812
ACD21248.1
Serine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: bxe:Bxe_B3001 serine--glyoxylate transaminase.
    
 0.812
ACD17109.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bxe:Bxe_A1408 putative nitrilase.
    
 0.807
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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