node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplU | rpmB | Dshi_1460 | Dshi_2583 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.986 |
rplU | rpmF | Dshi_1460 | Dshi_1718 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | TIGRFAM: TIGR01031-ribosomal protein L32; PFAM: pfam01783; Belongs to the bacterial ribosomal protein bL32 family. | 0.987 |
rplU | rpmG | Dshi_1460 | Dshi_2781 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Swiss-Prot: Q6N554-50S ribosomal protein L33 PFAM: ribosomal protein L33 TIGR01023 ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. | 0.980 |
rplU | rpmH | Dshi_1460 | Dshi_0333 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein L34, low swissprot and Ref ZP hit to 50S ribbosomal protein L34 from Silicibacter pomeroyi and Roseovarius nubinhibens ISM; Belongs to the bacterial ribosomal protein bL34 family. | 0.984 |
rplU | rpmI | Dshi_1460 | Dshi_0230 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein L35 KEGG: sil:SPO3599 ribosomal protein L35; high swissprot; Belongs to the bacterial ribosomal protein bL35 family. | 0.984 |
rplU | rpsD | Dshi_1460 | Dshi_2948 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.985 |
rplU | rpsK | Dshi_1460 | Dshi_0308 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.994 |
rplU | rpsN | Dshi_1460 | Dshi_0298 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.987 |
rplU | rpsO | Dshi_1460 | Dshi_2994 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.988 |
rplU | rpsR | Dshi_1460 | Dshi_2187 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.981 |
rpmB | rplU | Dshi_2583 | Dshi_1460 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.986 |
rpmB | rpmF | Dshi_2583 | Dshi_1718 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | TIGRFAM: TIGR01031-ribosomal protein L32; PFAM: pfam01783; Belongs to the bacterial ribosomal protein bL32 family. | 0.988 |
rpmB | rpmG | Dshi_2583 | Dshi_2781 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Swiss-Prot: Q6N554-50S ribosomal protein L33 PFAM: ribosomal protein L33 TIGR01023 ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. | 0.992 |
rpmB | rpmH | Dshi_2583 | Dshi_0333 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | PFAM: ribosomal protein L34, low swissprot and Ref ZP hit to 50S ribbosomal protein L34 from Silicibacter pomeroyi and Roseovarius nubinhibens ISM; Belongs to the bacterial ribosomal protein bL34 family. | 0.989 |
rpmB | rpmI | Dshi_2583 | Dshi_0230 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | PFAM: ribosomal protein L35 KEGG: sil:SPO3599 ribosomal protein L35; high swissprot; Belongs to the bacterial ribosomal protein bL35 family. | 0.985 |
rpmB | rpsD | Dshi_2583 | Dshi_2948 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.984 |
rpmB | rpsK | Dshi_2583 | Dshi_0308 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.983 |
rpmB | rpsN | Dshi_2583 | Dshi_0298 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.985 |
rpmB | rpsO | Dshi_2583 | Dshi_2994 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.987 |
rpmB | rpsR | Dshi_2583 | Dshi_2187 | Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.984 |