STRINGSTRING
ybeY ybeY Spro_1218 Spro_1218 gcvP gcvP Spro_1216 Spro_1216 era era rplU rplU Spro_4461 Spro_4461 rpsQ rpsQ rplQ rplQ Spro_2925 Spro_2925 rplK rplK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybeYProtein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (157 aa)    
Predicted Functional Partners:
Spro_1218
PFAM: PhoH family protein; KEGG: ypi:YpsIP31758_2916 PhoH family protein.
  
  
 0.945
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.884
Spro_1216
Transporter-associated region; PFAM: CBS domain containing protein; transporter-associated region; KEGG: yen:YE2988 hypothetical protein.
  
  
 0.870
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.848
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
 0.786
Spro_4461
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
  
  
 0.769
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.768
rplQ
PFAM: ribosomal protein L17; KEGG: yen:YE3897 50S ribosomal protein L17.
   
 
 0.765
Spro_2925
PFAM: PhoH family protein; KEGG: ypi:YpsIP31758_2125 putative PhoH protein.
  
  
 0.756
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
 
 0.740
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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