STRINGSTRING
Spro_1639 Spro_1639 Spro_2991 Spro_2991 Spro_1969 Spro_1969 Spro_3763 Spro_3763 Spro_3503 Spro_3503 Spro_4581 Spro_4581 Spro_4675 Spro_4675 Spro_4007 Spro_4007
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_1639TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: yen:YE1478 TrkA, potassium channel-family protein. (562 aa)    
Predicted Functional Partners:
Spro_2991
PFAM: UspA domain protein; KEGG: yen:YE2583 putative universal stress protein.
  
     0.466
Spro_1969
PFAM: UspA domain protein; KEGG: ppr:PBPRA0125 putative universal stress protein A.
  
     0.460
Spro_3763
Transcriptional antiterminator, Rof; PFAM: Modulator of Rho-dependent transcription termination; KEGG: sbo:SBO_0177 hypothetical protein.
  
     0.449
Spro_3503
KEGG: yen:YE1145 hypothetical protein.
  
     0.444
Spro_4581
TIGRFAM: integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: ent:Ent638_3785 integral membrane protein, YccS/YhfK family.
  
     0.442
Spro_4675
PFAM: Fimbrial protein; KEGG: plu:plu0769 MrfA protein.
  
     0.409
Spro_4007
PFAM: conserved hypothetical protein; KEGG: yen:YE0706 hypothetical protein; Belongs to the UPF0231 family.
  
     0.402
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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