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rmf rmf Spro_0882 Spro_0882 Spro_3670 Spro_3670 Spro_4368 Spro_4368 Spro_3761 Spro_3761 minE minE rpsR rpsR rpsU rpsU rplU rplU rpsE rpsE rpmC rpmC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
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Textmining
[Homology]
Score
rmfRibosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. (56 aa)    
Predicted Functional Partners:
Spro_0882
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ypi:YpsIP31758_3216 ribosomal subunit interface protein.
   
 
 0.904
Spro_3670
KEGG: yen:YE1016 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
   
    0.884
Spro_4368
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ypi:YpsIP31758_0440 ribosomal subunit interface protein.
   
 
 0.859
Spro_3761
PFAM: YaeQ family protein; KEGG: ypi:YpsIP31758_1035 hypothetical protein.
   
    0.657
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.655
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
 
 0.645
rpsU
PFAM: ribosomal protein S21; KEGG: kpn:KPN_03472 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
    
 
 0.638
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
   0.637
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.621
rpmC
PFAM: ribosomal protein L29; KEGG: ypi:YpsIP31758_3907 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.618
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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