STRINGSTRING
Spro_1925 Spro_1925 Spro_2658 Spro_2658 Spro_1250 Spro_1250 crl crl Spro_0456 Spro_0456 zapC zapC viaA viaA Spro_3603 Spro_3603 Spro_0965 Spro_0965 Spro_4891 Spro_4891 Spro_1921 Spro_1921
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_1925PFAM: protein of unknown function UPF0227; KEGG: ypi:YpsIP31758_1593 hypothetical protein; Belongs to the UPF0227 family. (180 aa)    
Predicted Functional Partners:
Spro_2658
KEGG: yps:YPTB2139 hypothetical protein.
  
     0.770
Spro_1250
KEGG: eca:ECA1344 hypothetical protein.
  
     0.753
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.727
Spro_0456
PFAM: protein of unknown function DUF1107; KEGG: ent:Ent638_0395 protein of unknown function DUF1107.
  
     0.723
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.716
viaA
SMART: von Willebrand factor type A; KEGG: ypi:YpsIP31758_0004 protein ViaA.
  
     0.715
Spro_3603
PFAM: protein of unknown function DUF1407; KEGG: yen:YE1079 hypothetical protein.
  
     0.707
Spro_0965
PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: yen:YE3204 hypothetical protein; Belongs to the UPF0255 family.
  
   
 0.693
Spro_4891
PFAM: protein of unknown function DUF1040; KEGG: yen:YE0018 hypothetical protein.
  
     0.660
Spro_1921
PFAM: protein of unknown function DUF1425; KEGG: ypi:YpsIP31758_1589 putative lipoprotein.
 
   
 0.659
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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