STRINGSTRING
rlmM rlmM Spro_3804 Spro_3804 Spro_3805 Spro_3805 Spro_3255 Spro_3255 nfuA nfuA yihI yihI Spro_2176 Spro_2176 Spro_3808 Spro_3808 Spro_4577 Spro_4577 Spro_4409 Spro_4409 ftsL ftsL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmMConserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. (367 aa)    
Predicted Functional Partners:
Spro_3804
PFAM: protein of unknown function DUF423; KEGG: yen:YE3299 hypothetical protein.
  
  
 0.903
Spro_3805
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ypi:YpsIP31758_0999 glycine cleavage system transcriptional activator.
  
    0.643
Spro_3255
PFAM: 37kDa nucleoid-associated protein; KEGG: eca:ECA2747 nucleoid-associated protein.
  
    0.598
nfuA
HesB/YadR/YfhF-family protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.536
yihI
Protein of unknown function DUF414; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.487
Spro_2176
PFAM: FAD linked oxidase domain protein; KEGG: yen:YE2174 hypothetical protein.
  
     0.452
Spro_3808
PFAM: Fe-S metabolism associated SufE; KEGG: yps:YPTB3019 hypothetical protein.
 
    0.452
Spro_4577
PFAM: protein of unknown function UPF0270; KEGG: yen:YE3952 hypothetical protein; Belongs to the UPF0270 family.
 
     0.420
Spro_4409
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.415
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.413
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.