STRINGSTRING
hflD hflD mnmA mnmA ABR72169.1 ABR72169.1 rnt rnt ABR71449.1 ABR71449.1 ABR71050.1 ABR71050.1 zipA zipA ABR72173.1 ABR72173.1 ABR72667.1 ABR72667.1 ABR72659.1 ABR72659.1 ABR72172.1 ABR72172.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
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Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflDPFAM: protein of unknown function DUF489; KEGG: pau:PA14_30140 hypothetical protein. (209 aa)    
Predicted Functional Partners:
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.952
ABR72169.1
PFAM: NUDIX hydrolase; KEGG: maq:Maqu_1761 NUDIX hydrolase.
       0.726
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
     0.695
ABR71449.1
PFAM: protein of unknown function DUF709; KEGG: csa:Csal_1462 protein of unknown function DUF709.
  
    0.652
ABR71050.1
PFAM: protein of unknown function DUF177; KEGG: csa:Csal_1597 protein of unknown function DUF177.
  
    0.619
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.595
ABR72173.1
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain protein; KEGG: maq:Maqu_1764 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.575
ABR72667.1
Protein-disulfide isomerase-like protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
     0.545
ABR72659.1
PFAM: protein of unknown function UPF0149; KEGG: maq:Maqu_3428 protein of unknown function UPF0149; Belongs to the UPF0149 family.
  
     0.539
ABR72172.1
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; KEGG: pae:PA2624 isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
       0.523
Your Current Organism:
Marinomonas sp. MWYL1
NCBI taxonomy Id: 400668
Other names: M. sp. MWYL1
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