STRINGSTRING
Rpic_3463 Rpic_3463 Rpic_0215 Rpic_0215 Rpic_3462 Rpic_3462 Rpic_0194 Rpic_0194 Rpic_3681 Rpic_3681 rsmI rsmI Rpic_3461 Rpic_3461 Rpic_3950 Rpic_3950 Rpic_3460 Rpic_3460
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Rpic_3463PFAM: protein of unknown function UPF0102; KEGG: rso:RSc3265 hypothetical protein; Belongs to the UPF0102 family. (125 aa)    
Predicted Functional Partners:
Rpic_0215
KEGG: rso:RSc0359 putative competence protein F-related protein.
 
    0.711
Rpic_3462
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rso:RSc3264 hypothetical signal peptide protein.
     
 0.710
Rpic_0194
Mg chelatase, subunit ChlI; KEGG: rso:RSc0338 probable Mg(2+) chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.699
Rpic_3681
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rso:RSc0068 probable smf protein.
 
    0.621
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.594
Rpic_3461
KEGG: rso:RSc3263 hypothetical signal peptide protein.
   
   0.460
Rpic_3950
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: rso:RS03712 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.429
Rpic_3460
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: rso:RSc3262 probable sulfide dehydrogenase flavocytochrome c oxidoreductase protein.
       0.419
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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