STRINGSTRING
Rpic_4452 Rpic_4452 Rpic_4451 Rpic_4451 Rpic_4449 Rpic_4449 Rpic_0946 Rpic_0946 Rpic_4448 Rpic_4448 Rpic_3006 Rpic_3006 Rpic_4447 Rpic_4447 dapB dapB dapA-2 dapA-2 dapA-4 dapA-4 Rpic_4450 Rpic_4450
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Rpic_4452TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: rso:RS05369 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (312 aa)    
Predicted Functional Partners:
Rpic_4451
PFAM: Aldehyde Dehydrogenase_; KEGG: rso:RS05368 probable ketoglutarate semialdehyde dehydrogenase protein.
 
 
 0.981
Rpic_4449
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rso:RSp0829 probable glucarate dehydratase protein.
 
  
 0.980
Rpic_0946
KEGG: rso:RSc1079 probable glucarate dehydratase protein; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein.
 
  
 0.965
Rpic_4448
KEGG: rso:RSp0830 probable D-galactarate dehydratase (D-galactarate dehydrogenase) protein; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
  
 0.962
Rpic_3006
PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_2247 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
  0.953
Rpic_4447
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rso:RS05364 hypothetical protein.
 
   
 0.730
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.692
dapA-2
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
     0.660
dapA-4
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
     0.631
Rpic_4450
TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0828 putative glucarate transporter (D-glucarate permease) transmembrane protein.
 
  
 0.580
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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