STRINGSTRING
rimO rimO rlmN rlmN ABS28557.1 ABS28557.1 ABS24315.1 ABS24315.1 ABS24313.1 ABS24313.1 glnS glnS ABS24312.1 ABS24312.1 rnj rnj ABS26398.1 ABS26398.1 ABS28477.1 ABS28477.1 ABS28088.1 ABS28088.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rimOMiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (470 aa)    
Predicted Functional Partners:
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.678
ABS28557.1
PFAM: Radical SAM domain protein; KEGG: ade:Adeh_4229 radical SAM; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.673
ABS24315.1
PFAM: protein of unknown function DUF520; KEGG: ade:Adeh_0094 protein of unknown function DUF520; Belongs to the UPF0234 family.
       0.648
ABS24313.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bch:Bcen2424_1485 hypothetical protein.
  
   0.607
glnS
TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; GatB/Yqey domain protein; KEGG: ade:Adeh_2599 glutaminyl-tRNA synthetase.
  
  
 0.603
ABS24312.1
PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_5335 glycosyl transferase, group 2 family protein.
       0.581
rnj
Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
     
 0.562
ABS26398.1
TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: ade:Adeh_1615 peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
  
    0.554
ABS28477.1
TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: ade:Adeh_4158 peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
  
    0.554
ABS28088.1
Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
 
  
 0.546
Your Current Organism:
Anaeromyxobacter sp. Fw1095
NCBI taxonomy Id: 404589
Other names: A. sp. Fw109-5, Anaeromyxobacter sp. Fw109-5
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