STRINGSTRING
rpsU rpsU rpsT rpsT rpsP rpsP rplS rplS rpsO rpsO rpmI rpmI rpmB rpmB rplU rplU rpsF rpsF rplM rplM rpsR rpsR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsUPFAM: ribosomal protein S21; KEGG: ade:Adeh_0718 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (64 aa)    
Predicted Functional Partners:
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.983
rpsP
PFAM: ribosomal protein S16; KEGG: ade:Adeh_1916 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.982
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.982
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.981
rpmI
PFAM: ribosomal protein L35; KEGG: ade:Adeh_1974 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.981
rpmB
PFAM: ribosomal protein L28; KEGG: mxa:MXAN_2695 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.981
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.981
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.980
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.980
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.979
Your Current Organism:
Anaeromyxobacter sp. Fw1095
NCBI taxonomy Id: 404589
Other names: A. sp. Fw109-5, Anaeromyxobacter sp. Fw109-5
Server load: low (30%) [HD]