rpmE protein (Pseudothermotoga lettingae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpmE

Ribosomal protein L31; Binds the 23S rRNA. (71 aa)

Predicted Functional Partners:

rpsP

0.994

rplS

0.993

rpsO

0.992

rpsT

0.988

rplU

0.988

rpsD

0.984

rplM

0.984

Tlet_1977

0.984

rpmB

0.982

rpmF

0.981

Your Current Organism:

Pseudothermotoga lettingae

NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Tlet_1977	rplM	Tlet_1977	Tlet_1976	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
Tlet_1977	rplS	Tlet_1977	Tlet_0123	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
Tlet_1977	rplU	Tlet_1977	Tlet_1979	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
Tlet_1977	rpmB	Tlet_1977	Tlet_1658	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	PFAM: ribosomal protein L28; KEGG: tma:TM0255 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.990
Tlet_1977	rpmE	Tlet_1977	Tlet_1623	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	Ribosomal protein L31; Binds the 23S rRNA.	0.984
Tlet_1977	rpmF	Tlet_1977	Tlet_1895	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: tma:TM0150 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.991
Tlet_1977	rpsD	Tlet_1977	Tlet_0606	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.993
Tlet_1977	rpsO	Tlet_1977	Tlet_1401	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.994
Tlet_1977	rpsP	Tlet_1977	Tlet_0128	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	PFAM: ribosomal protein S16; KEGG: tma:TM1566 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.997
Tlet_1977	rpsT	Tlet_1977	Tlet_0787	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.988
rplM	Tlet_1977	Tlet_1976	Tlet_1977	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.	0.998
rplM	rplS	Tlet_1976	Tlet_0123	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.994
rplM	rplU	Tlet_1976	Tlet_1979	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplM	rpmB	Tlet_1976	Tlet_1658	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L28; KEGG: tma:TM0255 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.993
rplM	rpmE	Tlet_1976	Tlet_1623	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L31; Binds the 23S rRNA.	0.984
rplM	rpmF	Tlet_1976	Tlet_1895	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: tma:TM0150 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.992
rplM	rpsD	Tlet_1976	Tlet_0606	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.995
rplM	rpsO	Tlet_1976	Tlet_1401	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.996
rplM	rpsP	Tlet_1976	Tlet_0128	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S16; KEGG: tma:TM1566 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.994
rplM	rpsT	Tlet_1976	Tlet_0787	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.993

page 1 of 6

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About