Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplQ | llmg_2546 | llmg_2353 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 0.997 |
| rplM | rplS | llmg_2546 | llmg_1671 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.998 |
| rplM | rplT | llmg_2546 | llmg_2029 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pseudogene; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.998 |
| rplM | rplU | llmg_2546 | llmg_1493 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplM | rpmA | llmg_2546 | llmg_1491 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
| rplM | rpmF | llmg_2546 | llmg_0099 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal L32p protein; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL32 family. | 0.996 |
| rplM | rpsB | llmg_2546 | llmg_2430 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PF00318: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
| rplM | rpsD | llmg_2546 | llmg_0296 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
| rplM | rpsP | llmg_2546 | llmg_0932 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
| rplM | trmD | llmg_2546 | llmg_0937 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.832 |
| rplQ | rplM | llmg_2353 | llmg_2546 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
| rplQ | rplS | llmg_2353 | llmg_1671 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.997 |
| rplQ | rplT | llmg_2353 | llmg_2029 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | Pseudogene; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| rplQ | rplU | llmg_2353 | llmg_1493 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplQ | rpmA | llmg_2353 | llmg_1491 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 50S ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
| rplQ | rpmF | llmg_2353 | llmg_0099 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | Ribosomal L32p protein; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL32 family. | 0.995 |
| rplQ | rpsB | llmg_2353 | llmg_2430 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | PF00318: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family. | 0.996 |
| rplQ | rpsD | llmg_2353 | llmg_0296 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
| rplQ | rpsP | llmg_2353 | llmg_0932 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | 30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
| rplQ | trmD | llmg_2353 | llmg_0937 | PF00366: Ribosomal protein L17, TIGR00059: ribosomal protein L17; High confidence in function and specificity. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.695 |
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