rpmH protein (Sulfurihydrogenibium sp. YO3AOP1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpmH

PFAM: ribosomal protein L34; KEGG: aae:aq_175b ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (45 aa)

Predicted Functional Partners:

rpmB

0.986

rpsT

0.985

rplU

0.981

rpmF

0.979

rpsP

0.979

rplM

0.978

rpmI

0.976

rpsO

0.975

rpsU

0.975

rplS

0.974

Your Current Organism:

Sulfurihydrogenibium sp. YO3AOP1

NCBI taxonomy Id: 436114
Other names: S. sp. YO3AOP1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	SYO3AOP1_1729	SYO3AOP1_0190	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.990
rplM	rplU	SYO3AOP1_1729	SYO3AOP1_0763	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplM	rpmB	SYO3AOP1_1729	SYO3AOP1_0861	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L28; KEGG: pmo:Pmob_1833 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.988
rplM	rpmF	SYO3AOP1_1729	SYO3AOP1_0825	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sus:Acid_6759 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.987
rplM	rpmH	SYO3AOP1_1729	SYO3AOP1_0973	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L34; KEGG: aae:aq_175b ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.978
rplM	rpmI	SYO3AOP1_1729	SYO3AOP1_1686	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L35; KEGG: aae:aq_792a 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.989
rplM	rpsO	SYO3AOP1_1729	SYO3AOP1_0791	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.994
rplM	rpsP	SYO3AOP1_1729	SYO3AOP1_1167	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S16; KEGG: tle:Tlet_0128 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.990
rplM	rpsT	SYO3AOP1_1729	SYO3AOP1_0094	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.989
rplM	rpsU	SYO3AOP1_1729	SYO3AOP1_1227	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S21; KEGG: aae:aq_867a 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.987
rplS	rplM	SYO3AOP1_0190	SYO3AOP1_1729	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.990
rplS	rplU	SYO3AOP1_0190	SYO3AOP1_0763	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rplS	rpmB	SYO3AOP1_0190	SYO3AOP1_0861	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein L28; KEGG: pmo:Pmob_1833 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.989
rplS	rpmF	SYO3AOP1_0190	SYO3AOP1_0825	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sus:Acid_6759 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.990
rplS	rpmH	SYO3AOP1_0190	SYO3AOP1_0973	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein L34; KEGG: aae:aq_175b ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.974
rplS	rpmI	SYO3AOP1_0190	SYO3AOP1_1686	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein L35; KEGG: aae:aq_792a 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.987
rplS	rpsO	SYO3AOP1_0190	SYO3AOP1_0791	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.988
rplS	rpsP	SYO3AOP1_0190	SYO3AOP1_1167	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein S16; KEGG: tle:Tlet_0128 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.993
rplS	rpsT	SYO3AOP1_0190	SYO3AOP1_0094	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.976
rplS	rpsU	SYO3AOP1_0190	SYO3AOP1_1227	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein S21; KEGG: aae:aq_867a 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.982