Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ETA_34390 | araB | ETA_34390 | ETA_17710 | Sugar kinase, ribokinase family; silverDB:etchr03425. | Ribulokinase; silverDB:etchr01760. | 0.807 |
ETA_34390 | kdgK | ETA_34390 | ETA_12450 | Sugar kinase, ribokinase family; silverDB:etchr03425. | 2-dehydro-3-deoxygluconokinase; silverDB:etchr01236. | 0.922 |
ETA_34390 | rpe | ETA_34390 | ETA_32020 | Sugar kinase, ribokinase family; silverDB:etchr03425. | Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase); silverDB:etchr03188; Belongs to the ribulose-phosphate 3-epimerase family. | 0.857 |
araA | araB | ETA_17720 | ETA_17710 | L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | Ribulokinase; silverDB:etchr01760. | 0.999 |
araA | araC | ETA_17720 | ETA_17670 | L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | Arabinose operon regulatory protein; silverDB:etchr01756. | 0.674 |
araA | araD | ETA_17720 | ETA_16270 | L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | L-ribulose-5-phosphate 4-epimerase; silverDB:etchr01617. | 0.974 |
araA | araF | ETA_17720 | ETA_17700 | L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | L-arabinose-binding periplasmic protein; silverDB:etchr01759. | 0.590 |
araB | ETA_34390 | ETA_17710 | ETA_34390 | Ribulokinase; silverDB:etchr01760. | Sugar kinase, ribokinase family; silverDB:etchr03425. | 0.807 |
araB | araA | ETA_17710 | ETA_17720 | Ribulokinase; silverDB:etchr01760. | L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | 0.999 |
araB | araC | ETA_17710 | ETA_17670 | Ribulokinase; silverDB:etchr01760. | Arabinose operon regulatory protein; silverDB:etchr01756. | 0.736 |
araB | araD | ETA_17710 | ETA_16270 | Ribulokinase; silverDB:etchr01760. | L-ribulose-5-phosphate 4-epimerase; silverDB:etchr01617. | 0.988 |
araB | araF | ETA_17710 | ETA_17700 | Ribulokinase; silverDB:etchr01760. | L-arabinose-binding periplasmic protein; silverDB:etchr01759. | 0.631 |
araB | galM | ETA_17710 | ETA_22800 | Ribulokinase; silverDB:etchr01760. | Galactose 1-epimerase (Mutarotase); Converts alpha-aldose to the beta-anomer. | 0.486 |
araB | gnd | ETA_17710 | ETA_13450 | Ribulokinase; silverDB:etchr01760. | Gluconate-6-phosphate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.800 |
araB | kdgK | ETA_17710 | ETA_12450 | Ribulokinase; silverDB:etchr01760. | 2-dehydro-3-deoxygluconokinase; silverDB:etchr01236. | 0.807 |
araB | rpe | ETA_17710 | ETA_32020 | Ribulokinase; silverDB:etchr01760. | Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase); silverDB:etchr03188; Belongs to the ribulose-phosphate 3-epimerase family. | 0.908 |
araB | rpiA | ETA_17710 | ETA_28080 | Ribulokinase; silverDB:etchr01760. | Ribose-5-phosphate isomerase A 1 (Phosphoriboisomerase A 1); Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.800 |
araC | araA | ETA_17670 | ETA_17720 | Arabinose operon regulatory protein; silverDB:etchr01756. | L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. | 0.674 |
araC | araB | ETA_17670 | ETA_17710 | Arabinose operon regulatory protein; silverDB:etchr01756. | Ribulokinase; silverDB:etchr01760. | 0.736 |
araC | araD | ETA_17670 | ETA_16270 | Arabinose operon regulatory protein; silverDB:etchr01756. | L-ribulose-5-phosphate 4-epimerase; silverDB:etchr01617. | 0.402 |
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