Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CJA_3082 | hflC | CJA_3082 | CJA_3076 | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | HflC protein; HflC and HflK could regulate a protease. | 0.521 |
| CJA_3082 | hflK | CJA_3082 | CJA_3077 | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.592 |
| CJA_3082 | hflX | CJA_3082 | CJA_3078 | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | Hypothetical protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.647 |
| CJA_3082 | hfq | CJA_3082 | CJA_3079 | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | Hfq protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.680 |
| CJA_3082 | miaA | CJA_3082 | CJA_3080 | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.897 |
| CJA_3082 | mutL | CJA_3082 | CJA_3081 | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.910 |
| folK | miaA | CJA_0387 | CJA_3080 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.745 |
| folK | purD | CJA_0387 | CJA_2748 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498. | Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family. | 0.724 |
| hflC | CJA_3082 | CJA_3076 | CJA_3082 | HflC protein; HflC and HflK could regulate a protease. | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | 0.521 |
| hflC | hflK | CJA_3076 | CJA_3077 | HflC protein; HflC and HflK could regulate a protease. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.999 |
| hflC | hflX | CJA_3076 | CJA_3078 | HflC protein; HflC and HflK could regulate a protease. | Hypothetical protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.875 |
| hflC | hfq | CJA_3076 | CJA_3079 | HflC protein; HflC and HflK could regulate a protease. | Hfq protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.907 |
| hflC | miaA | CJA_3076 | CJA_3080 | HflC protein; HflC and HflK could regulate a protease. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.770 |
| hflC | mutL | CJA_3076 | CJA_3081 | HflC protein; HflC and HflK could regulate a protease. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.477 |
| hflK | CJA_3082 | CJA_3077 | CJA_3082 | HflK protein; HflC and HflK could encode or regulate a protease. | N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01476; match to protein family HMM PF01520. | 0.592 |
| hflK | hflC | CJA_3077 | CJA_3076 | HflK protein; HflC and HflK could encode or regulate a protease. | HflC protein; HflC and HflK could regulate a protease. | 0.999 |
| hflK | hflX | CJA_3077 | CJA_3078 | HflK protein; HflC and HflK could encode or regulate a protease. | Hypothetical protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.949 |
| hflK | hfq | CJA_3077 | CJA_3079 | HflK protein; HflC and HflK could encode or regulate a protease. | Hfq protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.906 |
| hflK | miaA | CJA_3077 | CJA_3080 | HflK protein; HflC and HflK could encode or regulate a protease. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.793 |
| hflK | mutL | CJA_3077 | CJA_3081 | HflK protein; HflC and HflK could encode or regulate a protease. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.477 |
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