Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
amiD | ybjP | b0867 | b0865 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein. | Putative lipoprotein. | 0.573 |
amiD | ybjQ | b0867 | b0866 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein. | UPF0145 family protein. | 0.983 |
artI | artM | b0863 | b0861 | Arginine transporter subunit; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. | Arginine ABC transporter permease; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane. | 0.999 |
artI | artP | b0863 | b0864 | Arginine transporter subunit; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. | Arginine ABC transporter ATPase; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system. | 0.998 |
artI | ybjP | b0863 | b0865 | Arginine transporter subunit; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. | Putative lipoprotein. | 0.589 |
artM | artI | b0861 | b0863 | Arginine ABC transporter permease; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane. | Arginine transporter subunit; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. | 0.999 |
artM | artP | b0861 | b0864 | Arginine ABC transporter permease; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane. | Arginine ABC transporter ATPase; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system. | 0.999 |
artM | ybjP | b0861 | b0865 | Arginine ABC transporter permease; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane. | Putative lipoprotein. | 0.458 |
artP | artI | b0864 | b0863 | Arginine ABC transporter ATPase; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system. | Arginine transporter subunit; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. | 0.998 |
artP | artM | b0864 | b0861 | Arginine ABC transporter ATPase; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system. | Arginine ABC transporter permease; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane. | 0.999 |
artP | ybjP | b0864 | b0865 | Arginine ABC transporter ATPase; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system. | Putative lipoprotein. | 0.647 |
frdA | ybjP | b4154 | b0865 | Anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit; Two distinct, membrane-bound, FAD-containing enzymes are responsible for the catalysis of fumarate and succinate interconversion; the fumarate reductase is used in anaerobic growth, and the succinate dehydrogenase is used in aerobic growth. Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | Putative lipoprotein. | 0.700 |
gadA | ybjP | b3517 | b0865 | Glutamate decarboxylase A, PLP-dependent; Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria. | Putative lipoprotein. | 0.700 |
ybaY | ybjP | b0453 | b0865 | Outer membrane lipoprotein; Glycoprotein/polysaccharide metabolism; Protein involved in lipoprotein biosynthetic process and glycoprotein biosynthetic process. | Putative lipoprotein. | 0.486 |
ybeL | ybjP | b0643 | b0865 | DUF1451 family protein; Putative alpha helical protein. | Putative lipoprotein. | 0.734 |
ybjP | amiD | b0865 | b0867 | Putative lipoprotein. | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein. | 0.573 |
ybjP | artI | b0865 | b0863 | Putative lipoprotein. | Arginine transporter subunit; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. | 0.589 |
ybjP | artM | b0865 | b0861 | Putative lipoprotein. | Arginine ABC transporter permease; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for the translocation of the substrate across the membrane. | 0.458 |
ybjP | artP | b0865 | b0864 | Putative lipoprotein. | Arginine ABC transporter ATPase; Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Probably responsible for energy coupling to the transport system. | 0.647 |
ybjP | frdA | b0865 | b4154 | Putative lipoprotein. | Anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit; Two distinct, membrane-bound, FAD-containing enzymes are responsible for the catalysis of fumarate and succinate interconversion; the fumarate reductase is used in anaerobic growth, and the succinate dehydrogenase is used in aerobic growth. Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.700 |
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