node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplD | BbiDN127_0483 | BbiDN127_0484 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplM | BbiDN127_0483 | BbiDN127_0336 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
rplC | rpmF | BbiDN127_0483 | BbiDN127_0713 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.982 |
rplC | rpmJ | BbiDN127_0483 | BbiDN127_0504 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.993 |
rplC | rpsF | BbiDN127_0483 | BbiDN127_0114 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.992 |
rplC | rpsG | BbiDN127_0483 | BbiDN127_0382 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.993 |
rplC | rpsJ | BbiDN127_0483 | BbiDN127_0482 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.998 |
rplC | rpsL | BbiDN127_0483 | BbiDN127_0383 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.993 |
rplC | rpsZ | BbiDN127_0483 | BbiDN127_0496 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.996 |
rplC | tuf | BbiDN127_0483 | BbiDN127_0481 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.997 |
rplD | rplC | BbiDN127_0484 | BbiDN127_0483 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
rplD | rplM | BbiDN127_0484 | BbiDN127_0336 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.994 |
rplD | rpmF | BbiDN127_0484 | BbiDN127_0713 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.986 |
rplD | rpmJ | BbiDN127_0484 | BbiDN127_0504 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.993 |
rplD | rpsF | BbiDN127_0484 | BbiDN127_0114 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.991 |
rplD | rpsG | BbiDN127_0484 | BbiDN127_0382 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rplD | rpsJ | BbiDN127_0484 | BbiDN127_0482 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplD | rpsL | BbiDN127_0484 | BbiDN127_0383 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rplD | rpsZ | BbiDN127_0484 | BbiDN127_0496 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.999 |
rplD | tuf | BbiDN127_0484 | BbiDN127_0481 | Ribosomal L4/L1 family protein; Forms part of the polypeptide exit tunnel. | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.997 |