STRINGSTRING
rimK rimK PC1_1691 PC1_1691 PC1_1689 PC1_1689 zntB zntB PC1_3699 PC1_3699 PC1_1688 PC1_1688 gshB gshB kefB kefB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
rimKTIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: eca:ECA2679 ribosomal protein S6 modification protein. (303 aa)    
Predicted Functional Partners:
PC1_1691
KEGG: eca:ECA2678 hypothetical protein.
 
  
 0.884
PC1_1689
PFAM: nitroreductase; KEGG: eca:ECA2680 nitroreductase A; Belongs to the flavin oxidoreductase frp family.
  
  
 0.807
zntB
Mg2 transporter protein CorA family protein; Mediates efflux of zinc ions; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
 
     0.507
PC1_3699
PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: eca:ECA3910 putative mechanosensitive ion channel.
 
     0.506
PC1_1688
TIGRFAM: glutaredoxin, GrxA family; PFAM: glutaredoxin; KEGG: eca:ECA2681 glutaredoxin 1.
     
 0.460
gshB
KEGG: eca:ECA3924 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase domain protein; Belongs to the prokaryotic GSH synthase family.
 
   
 0.432
kefB
Potassium efflux system protein; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
  
  
 0.421
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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