STRINGSTRING
araB araB araA araA PC1_2362 PC1_2362 PC1_3698 PC1_3698 PC1_3697 PC1_3697 PC1_3879 PC1_3879 PC1_0086 PC1_0086 PC1_0747 PC1_0747 PC1_1320 PC1_1320 rpiA rpiA PC1_2032 PC1_2032
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
araBTIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: eca:ECA2274 ribulokinase. (566 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.998
PC1_2362
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: eca:ECA1960 L-ribulose-5-phosphate 4-epimerase.
 
 
 0.982
PC1_3698
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: spe:Spro_3939 L-ribulose-5-phosphate 4-epimerase.
 
 
 0.982
PC1_3697
Hexulose-6-phosphate isomerase; KEGG: spe:Spro_3938 putative L-xylulose 5-phosphate 3-epimerase; TIGRFAM: hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel.
 
  
  0.914
PC1_3879
KEGG: eca:ECA4089 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.907
PC1_0086
PFAM: PfkB domain protein; KEGG: eca:ECA4360 2-dehydro-3-deoxygluconokinase.
    
 0.807
PC1_0747
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: kpe:KPK_3428 ribose 5-phosphate isomerase B.
    
  0.806
PC1_1320
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
  0.800
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
PC1_2032
Transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA2270 DNA-binding transcriptional regulator AraC.
 
   
 0.567
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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