Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
PC1_2519 | PC1_2520 | PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA1781 hypothetical protein; Belongs to the UPF0176 family. | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eca:ECA1780 putative NADH-dependent flavin oxidoreductase. | 0.494 |
PC1_2519 | PC1_3630 | PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA1781 hypothetical protein; Belongs to the UPF0176 family. | PFAM: pseudouridine synthase; KEGG: eca:ECA3854 ribosomal large subunit pseudouridine synthase A. | 0.754 |
PC1_2519 | PC1_4136 | PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA1781 hypothetical protein; Belongs to the UPF0176 family. | PFAM: fatty acid desaturase; KEGG: eca:ECA0115 putative fatty acid desaturase. | 0.404 |
PC1_2520 | PC1_2519 | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eca:ECA1780 putative NADH-dependent flavin oxidoreductase. | PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA1781 hypothetical protein; Belongs to the UPF0176 family. | 0.494 |
PC1_3630 | PC1_2519 | PFAM: pseudouridine synthase; KEGG: eca:ECA3854 ribosomal large subunit pseudouridine synthase A. | PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA1781 hypothetical protein; Belongs to the UPF0176 family. | 0.754 |
PC1_4136 | PC1_2519 | PFAM: fatty acid desaturase; KEGG: eca:ECA0115 putative fatty acid desaturase. | PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA1781 hypothetical protein; Belongs to the UPF0176 family. | 0.404 |