STRINGSTRING
PC1_3288 PC1_3288 crl crl PC1_0190 PC1_0190 PC1_1219 PC1_1219 PC1_4230 PC1_4230 PC1_2778 PC1_2778 PC1_2014 PC1_2014 PC1_0885 PC1_0885 PC1_0961 PC1_0961 PC1_2823 PC1_2823 zapC zapC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3288PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: eca:ECA3465 fermentation/respiration switch protein; Belongs to the UPF0255 family. (416 aa)    
Predicted Functional Partners:
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
 
     0.786
PC1_0190
PFAM: protein of unknown function DUF1422; KEGG: eca:ECA4240 hypothetical protein.
  
     0.772
PC1_1219
KEGG: eca:ECA1344 hypothetical protein.
  
     0.765
PC1_4230
PFAM: protein of unknown function DUF1040; KEGG: eca:ECA0018 hypothetical protein.
  
     0.763
PC1_2778
PFAM: YfbU family protein; KEGG: eca:ECA3037 hypothetical protein; Belongs to the UPF0304 family.
  
     0.748
PC1_2014
KEGG: eca:ECA2287 hypothetical protein.
  
     0.744
PC1_0885
KEGG: eca:ECA0979 hypothetical protein.
  
     0.724
PC1_0961
PFAM: protein of unknown function UPF0253; KEGG: ypg:YpAngola_A3414 hypothetical protein; Belongs to the UPF0253 family.
  
     0.724
PC1_2823
PFAM: conserved hypothetical protein; KEGG: eca:ECA3080 hypothetical protein.
  
     0.721
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.704
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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