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PC1_3552 PC1_3552 PC1_0190 PC1_0190 PC1_1914 PC1_1914 PC1_0885 PC1_0885 PC1_1800 PC1_1800 PC1_1799 PC1_1799 PC1_0763 PC1_0763 PC1_0097 PC1_0097 PC1_0033 PC1_0033 PC1_1931 PC1_1931 secM secM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3552PFAM: conserved hypothetical protein; KEGG: eca:ECA3777 hypothetical protein; Belongs to the UPF0231 family. (119 aa)    
Predicted Functional Partners:
PC1_0190
PFAM: protein of unknown function DUF1422; KEGG: eca:ECA4240 hypothetical protein.
  
     0.749
PC1_1914
KEGG: eca:ECA2397 hypothetical protein.
  
     0.748
PC1_0885
KEGG: eca:ECA0979 hypothetical protein.
  
     0.747
PC1_1800
PFAM: protein of unknown function DUF1439; KEGG: eca:ECA2527 hypothetical protein.
  
     0.746
PC1_1799
PFAM: cytoplasmic chaperone TorD family protein; KEGG: eca:ECA2528 hypothetical protein.
  
     0.709
PC1_0763
PFAM: protein of unknown function DUF1131; KEGG: eca:ECA0881 hypothetical protein.
  
     0.707
PC1_0097
PFAM: protein of unknown function DUF1145; KEGG: eca:ECA4348 hypothetical protein.
  
     0.701
PC1_0033
PFAM: protein of unknown function DUF1375; KEGG: eca:ECA4404 hypothetical protein.
  
     0.698
PC1_1931
PFAM: protein of unknown function UPF0181; KEGG: eca:ECA2377 hypothetical protein; Belongs to the UPF0181 family.
  
     0.678
secM
Secretion monitor family proten; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.677
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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