STRINGSTRING
ravA ravA viaA viaA PC1_3419 PC1_3419 PC1_0190 PC1_0190 PC1_0872 PC1_0872 PC1_1983 PC1_1983 crl crl PC1_3288 PC1_3288 PC1_3140 PC1_3140 PC1_0033 PC1_0033 PC1_0754 PC1_0754
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
ravAATPase associated with various cellular activities AAA_5; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family. (499 aa)    
Predicted Functional Partners:
viaA
SMART: von Willebrand factor type A; KEGG: eca:ECA0004 hypothetical protein.
 
  
 0.965
PC1_3419
PFAM: protein of unknown function DUF1107; KEGG: eca:ECA3599 hypothetical protein.
  
     0.642
PC1_0190
PFAM: protein of unknown function DUF1422; KEGG: eca:ECA4240 hypothetical protein.
  
     0.638
PC1_0872
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: eca:ECA0967 ornithine decarboxylase.
   
 
 0.623
PC1_1983
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: eca:ECA2326 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.620
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.610
PC1_3288
PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: eca:ECA3465 fermentation/respiration switch protein; Belongs to the UPF0255 family.
  
     0.539
PC1_3140
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: eca:ECA3344 hypothetical protein.
  
     0.506
PC1_0033
PFAM: protein of unknown function DUF1375; KEGG: eca:ECA4404 hypothetical protein.
  
     0.504
PC1_0754
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: eca:ECA0871 malic enzyme.
  
    0.460
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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