Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplQ | rplR | ckrop_1774 | ckrop_1794 | 50S ribosomal protein L17. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplQ | rplS | ckrop_1774 | ckrop_1179 | 50S ribosomal protein L17. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.986 |
| rplQ | rplT | ckrop_1774 | ckrop_0832 | 50S ribosomal protein L17. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.988 |
| rplQ | rpmB | ckrop_1774 | ckrop_0482 | 50S ribosomal protein L17. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.972 |
| rplQ | rpmE2 | ckrop_1774 | ckrop_0483 | 50S ribosomal protein L17. | 50S ribosomal protein L31. | 0.947 |
| rplQ | rpmF | ckrop_1774 | ckrop_0484 | 50S ribosomal protein L17. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.984 |
| rplQ | rpmG | ckrop_1774 | ckrop_0481 | 50S ribosomal protein L17. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.972 |
| rplQ | rpmJ | ckrop_1774 | ckrop_1416 | 50S ribosomal protein L17. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.982 |
| rplQ | rpsF | ckrop_1774 | ckrop_2082 | 50S ribosomal protein L17. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
| rplQ | rpsN | ckrop_1774 | ckrop_0480 | 50S ribosomal protein L17. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.980 |
| rplR | rplQ | ckrop_1794 | ckrop_1774 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L17. | 0.999 |
| rplR | rplS | ckrop_1794 | ckrop_1179 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| rplR | rplT | ckrop_1794 | ckrop_0832 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplR | rpmB | ckrop_1794 | ckrop_0482 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.957 |
| rplR | rpmE2 | ckrop_1794 | ckrop_0483 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L31. | 0.911 |
| rplR | rpmF | ckrop_1794 | ckrop_0484 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| rplR | rpmG | ckrop_1794 | ckrop_0481 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.971 |
| rplR | rpmJ | ckrop_1794 | ckrop_1416 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.981 |
| rplR | rpsF | ckrop_1794 | ckrop_2082 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
| rplR | rpsN | ckrop_1794 | ckrop_0480 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.983 |
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