STRINGSTRING
gpkow gpkow dhx16 dhx16 dhx38 dhx38 bud13 bud13 prpf8 prpf8 armc7 armc7 atp6ap1la atp6ap1la parm1 parm1 prcc prcc prpf4 prpf4 sf3b3 sf3b3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
gpkowG-patch domain and KOW motifs-containing protein; RNA-binding protein involved in pre-mRNA splicing. Belongs to the MOS2 family. (506 aa)    
Predicted Functional Partners:
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 
 0.993
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.959
bud13
BUD13 homolog.
   
 
 0.937
prpf8
Pre-mRNA-processing factor 8.
   
 
 0.896
armc7
Armadillo repeat-containing 7.
   
   0.860
atp6ap1la
ATPase H+-transporting accessory protein 1-like a.
      
 0.851
parm1
Prostate androgen-regulated mucin-like protein 1.
      
 0.832
prcc
Proline-rich mitotic checkpoint control factor.
   
  
 0.829
prpf4
PRP4 pre-mRNA-processing factor 4 homolog (yeast).
   
 
 0.829
sf3b3
Splicing factor 3B subunit 3; Involved in pre-mRNA splicing as a component of the splicing factor SF3B complex, a constituent of the spliceosome. SF3B complex is required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12- dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mR [...]
   
   0.814
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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