STRINGSTRING
arih1l arih1l rbx1 rbx1 rps27a rps27a uba52 uba52 parp4 parp4 cul1a cul1a cul1b cul1b ube2l3b ube2l3b ube2l3a ube2l3a myhb myhb nedd8 nedd8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
arih1lE3 ubiquitin-protein ligase arih1l; E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin- conjugating enzyme E2 ube2l3. (533 aa)    
Predicted Functional Partners:
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 
 0.810
rps27a
Ribosomal protein S27a.
   
 
 0.804
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.749
parp4
Poly [ADP-ribose] polymerase.
   
 
 0.743
cul1a
Cullin 1a; Belongs to the cullin family.
   
 
 0.732
cul1b
Cullin 1b; Belongs to the cullin family.
   
 
 0.732
ube2l3b
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.710
ube2l3a
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.710
myhb
Myosin, heavy chain b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.699
nedd8
NEDD8 ubiquitin-like modifier.
    
 
 0.696
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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