DVU_0855 protein (Desulfovibrio vulgaris Hildenborough)

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DVU_0855

Radical SAM domain protein; Identified by match to protein family HMM PF04055. (367 aa)

Predicted Functional Partners:

DVU_0854

0.996

DVU_0857

0.973

DVU_3167

0.929

ctaB

0.900

hemB

0.698

DVU_3004

0.549

DVU_0665

0.548

DVU_0734

0.521

DVU_2012

0.458

thiD

0.457

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0665	DVU_0734	DVU_0665	DVU_0734	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	0.874
DVU_0665	DVU_0855	DVU_0665	DVU_0855	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.548
DVU_0665	DVU_0857	DVU_0665	DVU_0857	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.560
DVU_0665	DVU_3004	DVU_0665	DVU_3004	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.541
DVU_0665	ctaB	DVU_0665	DVU_1811	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Protoheme IX farnesyltransferase, putative; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.506
DVU_0665	hemB	DVU_0665	DVU_0856	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	0.421
DVU_0734	DVU_0665	DVU_0734	DVU_0665	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	0.874
DVU_0734	DVU_0854	DVU_0734	DVU_0854	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	NirD protein, putative; Identified by similarity to SP:Q52522.	0.540
DVU_0734	DVU_0855	DVU_0734	DVU_0855	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.521
DVU_0734	DVU_0857	DVU_0734	DVU_0857	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.630
DVU_0734	DVU_3004	DVU_0734	DVU_3004	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.434
DVU_0734	DVU_3167	DVU_0734	DVU_3167	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Heme biosynthesis protein, putative; Identified by similarity to SP:Q52522.	0.541
DVU_0734	ctaB	DVU_0734	DVU_1811	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Protoheme IX farnesyltransferase, putative; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.474
DVU_0734	hemB	DVU_0734	DVU_0856	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	0.994
DVU_0854	DVU_0734	DVU_0854	DVU_0734	NirD protein, putative; Identified by similarity to SP:Q52522.	Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.	0.540
DVU_0854	DVU_0855	DVU_0854	DVU_0855	NirD protein, putative; Identified by similarity to SP:Q52522.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.996
DVU_0854	DVU_0857	DVU_0854	DVU_0857	NirD protein, putative; Identified by similarity to SP:Q52522.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.964
DVU_0854	DVU_2012	DVU_0854	DVU_2012	NirD protein, putative; Identified by similarity to SP:Q52522.	Hypothetical protein; Identified by Glimmer2; putative.	0.503
DVU_0854	DVU_3004	DVU_0854	DVU_3004	NirD protein, putative; Identified by similarity to SP:Q52522.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.491
DVU_0854	DVU_3167	DVU_0854	DVU_3167	NirD protein, putative; Identified by similarity to SP:Q52522.	Heme biosynthesis protein, putative; Identified by similarity to SP:Q52522.	0.981

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