STRINGSTRING
mntP mntP DVU_0079 DVU_0079 DVU_2909 DVU_2909 rluD/coaE rluD/coaE DVU_2642 DVU_2642 DVU_2908 DVU_2908 DVU_2690 DVU_2690
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntPMembrane protein, putative; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family. (201 aa)    
Predicted Functional Partners:
DVU_0079
ZIP zinc transporter family protein; Identified by similarity to SP:Q06916; match to protein family HMM PF02535.
    
 0.915
DVU_2909
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
    0.747
rluD/coaE
Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.537
DVU_2642
alanyl-tRNA synthetase family protein, putative.
  
     0.523
DVU_2908
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.512
DVU_2690
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.453
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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