STRINGSTRING
araA araA ABK48294.1 ABK48294.1 ABK48295.1 ABK48295.1 ABK48310.1 ABK48310.1 ABK48312.1 ABK48312.1 ABK48308.1 ABK48308.1 ABK48307.1 ABK48307.1 ABK48299.1 ABK48299.1 ABK48316.1 ABK48316.1 ABK48313.1 ABK48313.1 ABK48297.1 ABK48297.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Coexpression
Experiments
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[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (500 aa)    
Predicted Functional Partners:
ABK48294.1
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: sde:Sde_0772 phosphoribosylglycinamide synthetase; Belongs to the ribulokinase family.
 
 
 0.998
ABK48295.1
PFAM: class II aldolase/adducin family protein; KEGG: sde:Sde_0773 AICARFT/IMPCHase bienzyme.
 
 
 0.994
ABK48310.1
KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase.
 
     0.771
ABK48312.1
KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.741
ABK48308.1
PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC1529 beta-xylosidase, family 43 glycosyl hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.727
ABK48307.1
PFAM: glycoside hydrolase, family 43; KEGG: bha:BH1867 hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.721
ABK48299.1
PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.719
ABK48316.1
KEGG: sde:Sde_3317 beta-xylosidase-like.
 
  
 0.665
ABK48313.1
PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase.
 
  
 0.659
ABK48297.1
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_0770 putative phosphatase.
       0.581
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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