STRINGSTRING
ABK48521.1 ABK48521.1 lapA lapA ABK48828.1 ABK48828.1 zapC zapC ABK49272.1 ABK49272.1 ABK48650.1 ABK48650.1 ABK49301.1 ABK49301.1 ABK46600.1 ABK46600.1 nagZ nagZ ABK47237.1 ABK47237.1 ABK49256.1 ABK49256.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
ABK48521.1PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein; Belongs to the UPF0227 family. (179 aa)    
Predicted Functional Partners:
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.766
ABK48828.1
KEGG: son:SO2832 hypothetical protein.
  
     0.738
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.710
ABK49272.1
PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein.
  
     0.676
ABK48650.1
PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein.
  
     0.665
ABK49301.1
KEGG: son:SO1295 major outer membrane lipoprotein, putative.
  
     0.650
ABK46600.1
KEGG: son:SO4346 acetolactate synthase small subunit.
  
     0.631
nagZ
Glycoside hydrolase, family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 0.621
ABK47237.1
PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein.
  
     0.613
ABK49256.1
Anti sigma-E protein, RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish [...]
  
     0.600
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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