LOC101112822 protein (Ovis aries) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101112822

Brain ribonuclease. (194 aa)

Predicted Functional Partners:

RNH1

0.966

LSG1

0.653

BGN

0.625

BDNF

0.624

GZMA

0.615

AMBN

0.578

BTN1A1

0.572

HOXC8

0.571

PDZD11

0.536

HOXD8

0.536

Your Current Organism:

Ovis aries

NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMBN	BDNF	ENSOARP00000012207	ENSOARP00000016220	Ameloblastin.	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	0.717
AMBN	BGN	ENSOARP00000012207	ENSOARP00000008210	Ameloblastin.	Biglycan; May be involved in collagen fiber assembly.	0.772
AMBN	BTN1A1	ENSOARP00000012207	ENSOARP00000000177	Ameloblastin.	Butyrophilin subfamily 1 member A1.	0.698
AMBN	GZMA	ENSOARP00000012207	ENSOARP00000008554	Ameloblastin.	Granzyme A; Belongs to the peptidase S1 family.	0.680
AMBN	HOXC8	ENSOARP00000012207	ENSOARP00000017507	Ameloblastin.	Homeobox C8.	0.688
AMBN	HOXD8	ENSOARP00000012207	ENSOARP00000018771	Ameloblastin.	Homeobox D8.	0.579
AMBN	LOC101112822	ENSOARP00000012207	ENSOARP00000021182	Ameloblastin.	Brain ribonuclease.	0.578
BDNF	AMBN	ENSOARP00000016220	ENSOARP00000012207	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Ameloblastin.	0.717
BDNF	BGN	ENSOARP00000016220	ENSOARP00000008210	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Biglycan; May be involved in collagen fiber assembly.	0.769
BDNF	BTN1A1	ENSOARP00000016220	ENSOARP00000000177	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Butyrophilin subfamily 1 member A1.	0.709
BDNF	GZMA	ENSOARP00000016220	ENSOARP00000008554	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Granzyme A; Belongs to the peptidase S1 family.	0.697
BDNF	HOXC8	ENSOARP00000016220	ENSOARP00000017507	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Homeobox C8.	0.697
BDNF	HOXD8	ENSOARP00000016220	ENSOARP00000018771	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Homeobox D8.	0.585
BDNF	LOC101112822	ENSOARP00000016220	ENSOARP00000021182	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	Brain ribonuclease.	0.624
BGN	AMBN	ENSOARP00000008210	ENSOARP00000012207	Biglycan; May be involved in collagen fiber assembly.	Ameloblastin.	0.772
BGN	BDNF	ENSOARP00000008210	ENSOARP00000016220	Biglycan; May be involved in collagen fiber assembly.	Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.	0.769
BGN	BTN1A1	ENSOARP00000008210	ENSOARP00000000177	Biglycan; May be involved in collagen fiber assembly.	Butyrophilin subfamily 1 member A1.	0.716
BGN	GZMA	ENSOARP00000008210	ENSOARP00000008554	Biglycan; May be involved in collagen fiber assembly.	Granzyme A; Belongs to the peptidase S1 family.	0.720
BGN	HOXC8	ENSOARP00000008210	ENSOARP00000017507	Biglycan; May be involved in collagen fiber assembly.	Homeobox C8.	0.710
BGN	HOXD8	ENSOARP00000008210	ENSOARP00000018771	Biglycan; May be involved in collagen fiber assembly.	Homeobox D8.	0.614