STRINGSTRING
MY1_0228 MY1_0228 MY1_0231 MY1_0231 MY1_0232 MY1_0232 MY1_0233 MY1_0233 MY1_0234 MY1_0234 MY1_0235 MY1_0235
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MY1_0228NADH-ubiquinone oxidoreductase, subunit A; COG matches:COG0838; PFAM matches:PF00507. (124 aa)
MY1_0231NADH dehydrogenase (Quinone); COG matches:COG0649; PFAM matches:PF00346; Belongs to the complex I 49 kDa subunit family. (378 aa)
MY1_0232NADH dehydrogenase (Quinone); COG matches:COG1005; PFAM matches:PF00146. (432 aa)
MY1_02334Fe-4S ferredoxin iron-sulfur binding domain protein; COG matches:COG1143; PFAM matches:PF00037. (165 aa)
MY1_0234NADH-ubiquinone/plastoquinone oxidoreductase chain 6; COG matches:COG0839; PFAM matches:PF00499. (170 aa)
MY1_0235NADH-ubiquinone oxidoreductase chain 4L; COG matches:COG0713; PFAM matches:PF00420. (87 aa)
Your Current Organism:
Nitrosarchaeum koreense
NCBI taxonomy Id: 1001994
Other names: Candidatus Nitrosoarchaeum koreensis MY1, N. koreense MY1, Nitrosarchaeum koreense MY1, Nitrosopumilus sp. MY1
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