STRINGSTRING
MY1_0122 MY1_0122 MY1_0206 MY1_0206 MY1_0208 MY1_0208 MY1_0209 MY1_0209 MY1_0210 MY1_0210 MY1_0211 MY1_0211 MY1_0299 MY1_0299 pckA pckA MY1_0374 MY1_0374 MY1_0375 MY1_0375 MY1_0986 MY1_0986 MY1_1261 MY1_1261 MY1_1315 MY1_1315 sucD sucD MY1_1460 MY1_1460 MY1_1513 MY1_1513 MY1_1593 MY1_1593 MY1_1874 MY1_1874
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MY1_0122Aminotransferase class I and II; COG matches:COG0436; PFAM matches:PF00155, PF01041, PF01053, PF00266. (390 aa)
MY1_0206Putative methylisocitrate lyase; COG matches:COG2513; PFAM matches:PF00463. (282 aa)
MY1_0208Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; COG matches:COG1053; PFAM matches:PF00890, PF02910. (570 aa)
MY1_0209Succinate dehydrogenase, subunit D; COG matches:COG2009. (144 aa)
MY1_0210Hypothetical protein. (108 aa)
MY1_0211Succinate dehydrogenase and fumarate reductase iron-sulfur protein; COG matches:COG0479. (249 aa)
MY1_0299Malate dehydrogenase; COG matches:COG0039; PFAM matches:PF00056, PF02866; Belongs to the LDH/MDH superfamily. (304 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (538 aa)
MY1_0374Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; COG matches:COG0674; PFAM matches:PF01855, PF01558. (636 aa)
MY1_0375Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; COG matches:COG1013; PFAM matches:PF02775, PF12367. (290 aa)
MY1_0986AMP-dependent synthetase and ligase; COG matches:COG0365; PFAM matches:PF00501, PF11930. (640 aa)
MY1_1261Citrate synthase; COG matches:COG0372; PFAM matches:PF00285. (387 aa)
MY1_1315Succinate--CoA ligase (ADP-forming); COG matches:COG0045; PFAM matches:PF08442, PF00549. (368 aa)
sucDCoA-binding domain protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (305 aa)
MY1_1460Glu/Leu/Phe/Val dehydrogenase; COG matches:COG0334; PFAM matches:PF00208, PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (424 aa)
MY1_1513Isocitrate dehydrogenase (NAD(+)); COG matches:COG0473; PFAM matches:PF00180. (336 aa)
MY1_1593Aconitate hydratase; COG matches:COG1048; PFAM matches:PF00330, PF00694. (754 aa)
MY1_1874Lactate/malate dehydrogenase; COG matches:COG0039; PFAM matches:PF02866, PF00056; Belongs to the LDH/MDH superfamily. (300 aa)
Your Current Organism:
Nitrosarchaeum koreense
NCBI taxonomy Id: 1001994
Other names: Candidatus Nitrosoarchaeum koreensis MY1, N. koreense MY1, Nitrosarchaeum koreense MY1, Nitrosopumilus sp. MY1
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