STRINGSTRING
MY1_1240 MY1_1240 MY1_0384 MY1_0384 MY1_0383 MY1_0383 MY1_0382 MY1_0382 leuC leuC sucD sucD MY1_1315 MY1_1315 MY1_1243 MY1_1243 MY1_1242 MY1_1242
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MY1_1240Isopropylmalate/isohomocitrate dehydrogenase; COG matches:COG0473; PFAM matches:PF00180. (337 aa)
MY1_03843-isopropylmalate dehydratase, small subunit; COG matches:COG0066; PFAM matches:PF00694. (194 aa)
MY1_03833-isopropylmalate dehydratase, large subunit; COG matches:COG0065; PFAM matches:PF00330. (471 aa)
MY1_03823-isopropylmalate dehydratase, small subunit; COG matches:COG0066; PFAM matches:PF00694. (161 aa)
leuC3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (423 aa)
sucDCoA-binding domain protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (305 aa)
MY1_1315Succinate--CoA ligase (ADP-forming); COG matches:COG0045; PFAM matches:PF08442, PF00549. (368 aa)
MY1_1243Acetolactate synthase; COG matches:COG0028; PFAM matches:PF02776, PF02775, PF00205. (565 aa)
MY1_1242Acetolactate synthase, small subunit; COG matches:COG0440; PFAM matches:PF10369, PF01842. (160 aa)
Your Current Organism:
Nitrosarchaeum koreense
NCBI taxonomy Id: 1001994
Other names: Candidatus Nitrosoarchaeum koreensis MY1, N. koreense MY1, Nitrosarchaeum koreense MY1, Nitrosopumilus sp. MY1
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