STRINGSTRING
MY1_0375 MY1_0375 MY1_0936 MY1_0936 MY1_0986 MY1_0986 MY1_1126 MY1_1126 MY1_1129 MY1_1129 MY1_1130 MY1_1130 MY1_1134 MY1_1134 MY1_1192 MY1_1192 MY1_1272 MY1_1272 folD folD MY1_1315 MY1_1315 sucD sucD MY1_1456 MY1_1456 MY1_1433 MY1_1433 MY1_1874 MY1_1874 MY1_1774 MY1_1774 MY1_0723 MY1_0723 MY1_0211 MY1_0211 MY1_0210 MY1_0210 MY1_0209 MY1_0209 MY1_0208 MY1_0208 MY1_0157 MY1_0157 MY1_0156 MY1_0156 MY1_1457 MY1_1457 MY1_1593 MY1_1593 MY1_1755 MY1_1755 MY1_0374 MY1_0374 MY1_0299 MY1_0299 MY1_0226 MY1_0226 MY1_0225 MY1_0225 MY1_0224 MY1_0224
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MY1_0375Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; COG matches:COG1013; PFAM matches:PF02775, PF12367. (290 aa)
MY1_0936Propanoyl-CoA C-acyltransferase; COG matches:COG0183; PFAM matches:PF02803. (369 aa)
MY1_0986AMP-dependent synthetase and ligase; COG matches:COG0365; PFAM matches:PF00501, PF11930. (640 aa)
MY1_1126Pyruvate, phosphate dikinase; COG matches:COG0574; PFAM matches:PF02896, PF01326, PF00391. (951 aa)
MY1_1129Glyoxalase/bleomycin resistance protein/dioxygenase; COG matches:COG0346; PFAM matches:PF00903. (131 aa)
MY1_1130Methylmalonyl-CoA mutase, large subunit; COG matches:COG1884; PFAM matches:PF01642. (533 aa)
MY1_1134Cobalamin B12-binding domain protein; COG matches:COG2185; PFAM matches:PF02310. (140 aa)
MY1_11923-hydroxybutyryl-CoA dehydrogenase; COG matches:COG1250; PFAM matches:PF02737, PF00725. (379 aa)
MY1_1272Iron-containing alcohol dehydrogenase; COG matches:COG1454; PFAM matches:PF00465. (314 aa)
folDMethenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (287 aa)
MY1_1315Succinate--CoA ligase (ADP-forming); COG matches:COG0045; PFAM matches:PF08442, PF00549. (368 aa)
sucDCoA-binding domain protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (305 aa)
MY1_1456Enoyl-CoA hydratase/isomerase; COG matches:COG1024; PFAM matches:PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (253 aa)
MY1_14335 10-methylenetetrahydrofolate reductase-like protein; COG matches:COG0685. (249 aa)
MY1_1874Lactate/malate dehydrogenase; COG matches:COG0039; PFAM matches:PF02866, PF00056; Belongs to the LDH/MDH superfamily. (300 aa)
MY1_1774Putative transcriptional regulator, CopG family; COG matches:COG0864; PFAM matches:PF08753. (127 aa)
MY1_0723Acetate--CoA ligase; COG matches:COG0365; PFAM matches:PF00501, PF11930. (638 aa)
MY1_0211Succinate dehydrogenase and fumarate reductase iron-sulfur protein; COG matches:COG0479. (249 aa)
MY1_0210Hypothetical protein. (108 aa)
MY1_0209Succinate dehydrogenase, subunit D; COG matches:COG2009. (144 aa)
MY1_0208Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; COG matches:COG1053; PFAM matches:PF00890, PF02910. (570 aa)
MY1_0157Vinylacetyl-CoA Delta-isomerase; COG matches:COG2368; PFAM matches:PF11794, PF03241. (508 aa)
MY1_0156CoA-binding domain protein; COG matches:COG1042; PFAM matches:PF02629. (698 aa)
MY1_1457Putative CoA-binding domain protein; COG matches:COG1042; PFAM matches:PF08442. (705 aa)
MY1_1593Aconitate hydratase; COG matches:COG1048; PFAM matches:PF00330, PF00694. (754 aa)
MY1_1755Propanoyl-CoA C-acyltransferase; COG matches:COG0183; PFAM matches:PF00108. (384 aa)
MY1_0374Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; COG matches:COG0674; PFAM matches:PF01855, PF01558. (636 aa)
MY1_0299Malate dehydrogenase; COG matches:COG0039; PFAM matches:PF00056, PF02866; Belongs to the LDH/MDH superfamily. (304 aa)
MY1_0226Biotin/lipoyl attachment domain-containing protein; COG matches:COG4770; PFAM matches:PF00364. (170 aa)
MY1_0225Carbamoyl-phosphate synthase L chain ATP-binding protein; COG matches:COG0439; PFAM matches:PF02786, PF00289, PF02785, PF02222, PF08443. (495 aa)
MY1_0224Carboxyl transferase; COG matches:COG4799; PFAM matches:PF01039. (515 aa)
Your Current Organism:
Nitrosarchaeum koreense
NCBI taxonomy Id: 1001994
Other names: Candidatus Nitrosoarchaeum koreensis MY1, N. koreense MY1, Nitrosarchaeum koreense MY1, Nitrosopumilus sp. MY1
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